No feedback, therefore I'll assume that it's ok to commit these changes. Unfortunately I get lots of differences after running the autogen.sh script: The files aclocal.m4, configure, and all Makefile.in have differences. The differences in Makefile.in are minor (a few added lines like "AR = @AR@"). The differences in configure probably are because I use autoconf version 2.59; the existing files are from version 2.57. The differences in aclocal.m4 are huge even though I use the same automake version 1.6.3 that was used to generate these files. What should I do here? Just commit "my" files?